Webb6 RunHarmony Usage moe_ridge_get_betas(harmonyObj) Arguments harmonyObj Trained harmony object. Get this by running HarmonyMatrix function with return_object=TRUE. Value Returns nothing, modifies object in place. RunHarmony Harmony single cell integration Description Run Harmony algorithm with Seurat and SingleCellAnalysis … Webb4 nov. 2024 · harmony算法与其他整合算法相比的优势 :. (1)整合数据的同时对稀有细胞的敏感性依然很好;. (2)省内存;. (3)适合于更复杂的单细胞分析实验设计,可以比较来自不同供体,组织和技术平台的细胞。. 基本原理 :我们用不同颜色表示不同数据集,用 …
harmony: Fast, Sensitive, and Accurate Integration of Single Cell …
Webb17 sep. 2024 · runHarmony with a Seurat object #141. Open pengxin2024 opened this issue Sep 17, 2024 · 1 comment Open runHarmony with a Seurat object #141. pengxin2024 opened this issue Sep 17, 2024 · 1 comment Comments. Copy link pengxin2024 commented Sep 17, 2024. Hi Harmony developers, Webb19 aug. 2024 · Overview of Harmony algorithm Fast, sensitive and accurate integration of single-cell data with Harmony #系统需求 Linux, OS X, 和Windows系统均可以; R 版本需 … smileworks dentistry chandler
harmony package - RDocumentation
Webb原则上,我们可以使用不同的方法计算细胞和细胞簇之间的相似性。同样,也可以使用不同的归一化策略。在simspec包中,我们基于在给定的基因列表(默认是高度变化的基因)中使用Spearman相关性(默认)或Pearson相关性作为相似性的度量。同时,提供了两种不同的归一 … Webb13 nov. 2024 · cell_lines: List of metadata table and scaled PCs matrix cell_lines_small: Same as cell_lines but smaller (300 cells). harmony: Harmony: fast, accurate, and robust single cell integration. HarmonyMatrix: Main Harmony interface moe_ridge_get_betas: Get beta Utility pipe: Pipe operator RunHarmony: Harmony single cell integration Browse all... Webb4 nov. 2024 · 安装 library(devtools) install_github("immunogenomics/harmony") 流程 我们以Seurat v3为例,使用 harmony 进行数据整合: library(Seurat) library(cowplot) … smileworks chicago