Chimeric paired
WebMar 19, 2010 · In addition, we also identified 234 putative chimeric transcripts that seem to be produced by trans-splicing, indicating that transcript fusion events are more common than expected. ... It has been reported that the standard Illumina paired-end sequencing protocol can produce chimeric paired reads (Quail et al. 2008); therefore, ... Web5 Chimeric and circular alignments.13 ... 9 Merging and mapping of overlapping paired-end reads.17 10 Detection of personal variants overlapping alignments.17 11 WASP ltering …
Chimeric paired
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WebJul 28, 2009 · Using the paired-end transcriptome sequencing approach, we observed read-through mRNA chimeras, tissue-type restricted chimeras, converging transcripts, diverging transcripts, and overlapping mRNA transcripts. Last, we successfully used paired-end transcriptome sequencing to detect previously undescribed ETS gene fusions in prostate … http://samtools.github.io/hts-specs/SAMv1.pdf
WebDefine chimeric. chimeric synonyms, chimeric pronunciation, chimeric translation, English dictionary definition of chimeric. adj. 1. Relating to or being an organism, part, or … WebOct 23, 2012 · In this work, we discussed a novel computational approach to use discordant alignments of paired-end RNA-seq data to identify chimeric transcripts. Our method, named EricScript, makes use of the local realignment of the sequence reads that align across a gene fusion boundary to search for evidence of gene fusion events.
WebApr 1, 1999 · The role of chimeric paired box transcription factors in the pathogenesis of pediatric rhabdomysarcoma Cancer Res. 1999 Apr 1;59(7 Suppl):1711s-1715s. Author ... These translocations result in chimeric transcripts consisting of 5' PAX3 or PAX7 exons fused to 3' FKHR exons, which encode fusion proteins containing the PAX3 or PAX7 … WebSAM records in a chimeric alignment have the same QNAME and the same values for 0x40 and 0x80 flags (see Section 1.4). The decision regarding which linear alignment is representative is arbitrary. Read alignment A linear alignment or a chimeric alignment that is the complete representation of the alignment of the read.
WebAug 11, 2011 · Paired alignments within the fragment size range (default: 0–1000) are referred to as concordantly mapping reads (Fig. 1A). ChimeraScan uses these …
Webchimeric: ( kī-mēr'ik ), 1. Relating to a chimera. Compare: mosaicism . 2. Composed of parts that are of different origin and are seemingly incompatible. crystal f fin shred marbl 8ozWebJun 30, 2024 · To figure out whether my data actually does contain any chimType 1 reads, I aligned _R1 and _R2 both individually with chimeric settings enabled (--readFilesIn … crystal fibrotechWebDec 15, 2012 · We proposed a novel computational framework, named chimEric tranScript detection algorithm (EricScript), for the identification of gene fusion products in paired … dwayne johnson intermittent fastingWebAug 3, 2024 · The chimeric paired reads are the paired-end reads in which one read is fully aligned to MmuPV1 genome (as defined by aligner), while the other read is perfectly aligned to mouse genome. This suggests that there is … dwayne johnson it\u0027s about drive lyricsWebFeb 24, 2024 · EpiVIA parses each read and identifies the chimeric fragments, which are further classified into three different categories based on how the read pair is aligned to the combined reference genome: 1) Pair-chimeric are the fragments with one read mapped to the host genome and the other mapped to the provirus (or vector) genome; 2) host … dwayne johnson interesting factsWebOct 25, 2024 · Chimeric Paired: 0 (0.00%) Unmapped: 0 (0.00%) Library Complexity Estimate: 23,718,686-bash-4.1$ head .hic -n 14 HI /usr/local/apps/juicer/juicer … dwayne johnson is not 6\u00275Web5 Chimeric and circular alignments.13 ... 9 Merging and mapping of overlapping paired-end reads.17 10 Detection of personal variants overlapping alignments.17 11 WASP ltering of allele speci c alignments.18 12 Detection of multimapping chimeras.18 13 STARsolo: mapping, demultiplexing and gene quanti cation for single cell RNA- ... crystal fibre